First hole I drilled was for the grounding wire that sits beneath the bridge. Don't think you are not going to ground the guitar and get away with it and you will know it's not grounded by the hum the guitar generates. Touch the bridge the hum goes away, that is because it is now grounded. For the ground wire, you can use the type of wiring used in jewelry making and I mention this because it is readily available at any craft store such as Jo Anne's or Michael's. My wife makes jewelry that's how I know this.
The last hole to drill is the input jack. For this I have built a cradle using plywood and 1 inch dowels. the guitar has the front horn placed beneath the from dowel and the back of the guitar
For the placement of the jack input, I measure across the width of the guitar and place a pencil mark to indicate where the center is. Using a small drill bit, I drill a pilot hole for the next larger bit and so on. Not knowing if the buyers preference is a jack plate (7/8) or a self mounting input jack, I leave it a size that can be enlarged without to much difficulty. Note that the guitar's backside is flush against the one inside of the box. This is to ensure that the guitar is straight up and down when drilling. To drill out the hole larger, lay the guitar on its side and using a hand drill and a larger bit, drill away.
This concludes this project. Nothing to do but package it up and ship it out. Next project....not sure yet but Australia has from very nice wood that I am considering.